Amplicon analysis with Dada2
An example workflow using Dada2
Tutorials
Linux use
Using Scinet’s command line interface
Metagenomics tutorial part 1: Quality control, assembly and mapping
An example workflow for assembly based metagenomics
Metagenomics tutorial Part 2: annotation, binning and analysis
An example workflow for assembly based metagenomics using Anvi’o
Metatranscriptomics tutorial
An example workflow for assembly based metatranscriptomics
Amplicon analysis with QIIME2
An example workflow using QIIME2 version 2017.7
Software to install before the microbiome workshop
Instructions for installing the required tutorial software on Windows, Mac and Ubuntu machines